Part Six. How to Take Care of Your Immune System and Reduce Your Risk of Disease.




DO YOU KNOW?
  • Immunization and Vaccination
  • Gastroesophageal Reflux Disease
  • Antacids
  • Hernia
  • Thyroid Dysfunction and Immune System Health
  • Genetics and Disease
  • Epigenetics
  • Proteomics
  • Neoevolution
  • Food or Supplement?
  • To Salt or Not to Salt? That is the Question.
  • How the Brain Communicates With the Immune System
  • The Enteric System
  • Antioxidants for Immune System Health    


Immunization and Vaccination
More health benefit has been achieved by hygiene and nutrition than by any medical or pharmaceutical treatment. To Live and Die in America by Robert Chernomas and Ian Hudson

Immunity is the process of the immune system to develop protection against  foreign pathogens and is a function of the adaptive immune system; it also involves immunological memory and the ability to rapidly respond to a second encounter of the pathogen. B cells and T cells of the adaptive immune system produce specific antibodies designed to recognize and attach to specific pathogens.

The human immune system is a multi-layered, sophisticated and highly-adaptive defense system of structures, and mechanical, chemical, and biological processes that protect us from pathogens such as viruses, bacteria, parasites, toxins, toxic material. fungus, allergens, and carcinogens. The human adaptive immune system has the ability to create antibodies to any pathogen, but sometimes the human host expires before the antibody can be effective.
 
Active immunization happens when there is direct exposure to a pathogen. Artificial active immunization involves the injection of pathogenic microbes, or parts of them. 

Passive immunization involves the transfer of pre-synthesized elements of the immune system (antibodies) to a person so that their body does not need to produce these elements itself. Currently, antibodies can be used for passive immunization. This method of immunization begins to work very quickly, but it is short lasting, because the antibodies are naturally broken down, and if there are no B cells to produce more antibodies, they will disappear. Passive immunization occurs physiologically, when antibodies are transferred from mother to fetus during pregnancy, to protect the fetus before and shortly after birth. Artificial passive immunization is normally administered by injection and is used if there has been a recent outbreak of a particular disease or as an emergency treatment for toxicity (for example, for tetanus). 


Vaccination is the administration of pathogenic material to stimulate the immune system of an individual to develop adaptive immunity to a disease. Vaccines can prevent or ameliorate the effects of infection by many pathogens. Medically, vaccination is considered to be the most effective method of preventing infectious diseases. The essential empiricism behind such immunizations is that the vaccine triggers an immune response more rapidly than the natural infection itself.

The active (infectious) agent of a vaccine may be intact but inactivated (non-infective) or attenuated (with reduced infectiousness) forms of the causative pathogens, or purified components of the pathogen that have been found to be highly immunogenic (e.g., the outer coat proteins of a virus). Toxoids are produced for the immunization against toxin-based diseases, such as the modification of tetanospasmin toxin of tetanus to remove its toxic effect but retain its immunogenic effect. Innoculation is a serum or vaccine of the unweakened, live pathogens to produce or boost immunity to a specific disease and to minimize the severity of the infection.

Vaccines for cancer, heart disease, and obesity are being researched as well as new types of vaccines and vaccination methods.

Adverse effects
A 16-member committee of The National Academy of Science’s Institute of Medicine has confirmed 14 adverse effects of 8 common vaccines including fainting, seizures, allergic reactions and brain inflammation. The committee acknowledged that there was insufficient evidence to reach conclusions about many concerns like the possible links between vaccines and SID (sudden infant death syndrome), autism, type 1 diabetes, auto immune diseases such as MS and Lupus, respiratory diseases, and ADHD.

Vaccines primarily contain antigenic material but also contain antibiotics, preservatives and adjuvants. An adjuvant is an agent that may stimulate the immune system and increase the response to a vaccine, to accelerate, prolong, or enhance antigen-specific immune responses when used in combination with specific vaccine antigens without having any specific antigenic effect in itself. Aluminum salts are the commonly used adjuvants in human vaccines. These salts are unfavorable because they develop their effect by inducing inflammation, which is also the basis for the extended side-effect pattern of this adjuvant and they are neurotoxins. New experimental organic adjuvants and virosomes are being researched for human vaccines. Thimerosal is an antibacterial and antifungal preservative commonly used in human vaccinations that is derived from mercury and it is also a neurotoxin. Current changes are being made to replace thimerosal in vaccines.






Gastroesophageal Reflux Disease

Gastroesophageal Reflux Disease (GERD)

GERD occurs when there is change or damage to the barrier between the esophagus and the stomach, allowing stomach acid into the esophagus. Often referred to as acid reflux, heartburn or indigestion.
The most-common symptoms of GERD are heartburn, regurgitation and trouble swallowing. Less common symptoms include pain with swallowing, increased salivation, nausea, chest pain, and chronic coughing.

Chronic acid reflux will cause irritation of the esophagus and this can advance to scarring, ulceration, inflammation and hemorrhaging and may lead to esophageal cancer.



Causes of Acid Reflux Disease

Diet The primary cause of GERD is a high sugar and fat, low fiber, unhealthy diet, impairing digestive functions and leading to chemical and physical structural changes and damage. 

Basic Health Habits Long-term neglect of basic health habits, coupled with unhealthy habits, leads to a cascade effect of health deterioration and complications.

Pharmaceutical Medications Antibiotics interfere with healthy bacteria in the digestive system and lead to a cascade of secondary complications, especially repeated and long term use. Antibiotics commonly prescribed for children's ear infections have been shown to lead to colitis. Long term and repeated use of NSAIDS (nonsteroidal antinflammatory drugs) are harmful to the digestive system. Nonsteroidal anti-inflammatory drugs include aspirin, ibuprofen (Motrin, Advil, Nuprin) and naproxen (Aleve). They are commonly associated with causing peptic ulcers, and also may cause GERD or increase the severity of symptoms in people who already have GERD. Research has shown that long-term NSAID users were twice as likely to have GERD symptoms as non-NSAID users. Certain medications can affect stomach acid production and gastric motility or can interfere with the normal opening and closing of the LES.

Acidic Foods: Some foods increase the acidity or the amount of acid produced by the stomach. These foods include alcohol, acidic juices, tomato products, peppermints, chocolate, and soda.

Smoking: Is one of the unhealthy habits that makes reflux worse and contributes to peptic ulcers, esophagitis, and gastritis.

Hiatal Hernia: A hiatal or diaphragmatic hernia often accompanies gastroesophageal disease. The region of the muscular diaphragm through which the esophagus passes may enlarge and allow part of the stomach to move up through it. This alters the pressure at the end of the esophagus and allows reflux to occur.

Obesity: Stomach pressure increases with abdominal girth. As stomach pressure increases, it becomes more difficult for the LES to prevent reflux. 

Nerve and Muscle abnormalities: Opening and closing of the LES relies on normal muscular function and nerve conduction.



Antacids

An antacid is a substance which neutralizes stomach acidity, relieving heartburn, the major symptom of gastroesophageal reflux disease (GERD) or acid indigestion. Antacids based on calcium carbonate were found to actually increase the acidity of the stomach. However, all antacids reduced acidity in the lower esophagus. Reduced stomach acidity may result in an impaired ability to digest and absorb certain nutrients, such as iron and the B vitamins. Since the low pH of the stomach normally kills ingested bacteria, antacids can increase the vulnerability to infection.

Calcium from antacids can cause milk-alkali syndrome, which has serious toxicity and can lead to renal failure and alkalosis. Hypercalcaemia  is exacerbated by dehydration. Compounds containing calcium may also increase calcium output in the urine, which might be associated with kidney stones and can cause constipation. Antacids increase the risk of cancer of the esophagus.

Proton-pump inhibitors (PPIs) are a group of drugs whose main action is a pronounced and long-lasting reduction of gastric acid production. They are the most potent inhibitors of acid secretion available today. The group followed and has largely superseded another group of pharmaceuticals with similar effects, but different mode of action, called H2-receptor antagonists. High dose or long-term use of PPIs carry a possible increased risk of bone fractures.



Natural Remedies for GERD

Increasing your body's natural production of hydrochloric acid in the stomach is the first step to prevent acid reflux. The most effective course of action is to reduce and eliminate processed food, sugar and unhealthy fats, to increase soluble and insoluble fiber, water and probiotics, vegetables, beans and fruit.

Digestive Enzymes
Enzymes are found in abundance in raw food. Cooking food over 116° fahrenheit destroys these health promoting enzymes. All cooked foods are devoid of enzymes so only living and raw foods are high in nutrient values and the enzyme levels are crucial to combat acid reflux. There are many good enzyme supplements available. 


Vitamin D
Increasing vitamin D levels will optimize production of 200 antimicrobial peptides that aid in eradicating any infection in your body, including in the esophagus. Vitamin D is free and in abundance through appropriate levels of sun exposure. If this is not possible, I would recommend eating foods high in Vitamin D or taking a high-quality vitamin D3 supplement. 

Unpasturized Organic Apple Cider Vinegar

I recommended taking one tablespoon of raw organic apple cider vinegar mixed in a small glass (about 4 ounces) of purified water before each meal. This will help calm the stomach and help with digestion. This remedy also works for acute episodes of acid reflux.

Umeboshi plum concentrate 
Stir a tiny amount into a cup of tepid or hot (not boiling) water and sip to relieve almost any digestive ailment, including acid indigestion, diarrhea, constipation, food poisoning, and hangover nausea. It’s also good for headaches.

Baking soda  
Bicarbonate of soda is a natural antacid to treat heartburn and stomach upset. It is not recommended if you have high blood pressure or if you are on sodium restricted diets. A spoonful in a glass of water and drank before it stops fizzing is best. Buy from an organic or natural food store. 

Organic Aloe Vera Juice
Aloe Vera juice is commonly used to soothe and heal upset stomach, diarrhea and inflammation associated with bowel diseases such as ulcerative colitis. One of the added benefits of aloe vera is improved digestion. 


Glutamine
This amino acid naturally occurs in the human body. Glutamine can be found in milk, eggs, fish, parsley, spinach. Glutamine is an anti-inflammatory that reduces the intestinal inflammation caused by acid reflux. 


Licorice Root  
Natural licorice root is an effective home remedy for acid reflux which works by coating the stomach with a protective gel. 
 



Hiatus Hernia

Hernia

A hernia is the protrusion
(or herniation) of the upper part of the stomach into the thorax through a tear or weakness in the diaphragm. By far the most common hernias develop in the abdomen, when a weakness in the abdominal wall evolves into a localized hole through which adipose tissue, or abdominal organs may protrude. 

Most of the time, hernias develop when pressure in the compartment of the residing organ is increased, and the boundary is weak or weakened. Mechanical causes include: improper heavy weight lifting, chronic coughing, sharp blows to the abdomen, tight clothing and incorrect posture. 

Conditions that increase the pressure of the abdominal cavity may also cause hernias or worsen existing ones. Some examples would be: obesity, straining during a bowel movement or urination, chronic lung disease, and also, fluid in the abdominal cavity. 

If muscles are weakened due to poor nutrition, smoking, and poor tone, hernias are more likely to occur. A hiatus hernia may occur when the stomach is enlarged and protrudes through the diaphragm as a result of chronic indigestion.

  • The most common (95%) is the sliding hiatus hernia, where the gastroesophageal junction moves above the diaphragm together with some of the stomach.
  • The second kind is rolling (or paraesophageal) hiatus hernia, when a part of the stomach herniates through the esophageal hiatus and lies beside the esophagus, without movement of the gastroesophageal junction. It accounts for the remaining 5% of hiatus hernias.
  • A third kind of hernia is a combination of the first and second kinds.




Thyroid Gland

Thyroid dysfunction and Immune System Health

Though rarely thought of as part of the immune system, the thyroid gland plays a crucial role in maintaining the body's defenses. Hormones produced by the thyroid help regulate the metabolic rate within each cell and directly influence over 100 different cellular enzymes. With hypothyroidism, individuals routinely become more susceptible to viral and bacterial infections, especially those of the respiratory and urinary tracts.


Hypothyroidism
Based on research, there are three primary reasons for the high rate of hypothyroidism that we now have in North America:

  • Iodine Deficiency
The major problem stems from a lack of iodine in the diet. Iodine is one of the essential components of thyroid hormones. Without sufficient iodine, the production of thyroid hormones is limited. Iodine consumption has dropped dramatically in North America over the past 20 years. This drop is due in part to the depletion and contamination of our soil/food, and in part to a decrease in the addition of healthy salts in our food and an increase of unhealthy salts (including refined salts in processed foods). Please see HEALTH COACH: To Salt or Not to Salt? That is The Question, below. Iodine has a nutritional relationship with selenium.

Why is Iodine so important? Iodine is a mineral that is essential for proper thyroid function. Iodine, when combined with the amino acid tyrosine, produces vital thyroid hormones that control our metabolism, enzyme and protein synthesis, and are essential in the development of the skeletal and central nervous systems of developing fetuses.
Iodine deficiency gives rise to hypothyroidism, symptoms of which are extreme fatigue, goitre, mental slowing, depression, weight gain, and low basal body temperatures. Iodine deficiency is the leading cause of preventable mental retardation. The recommended dietary allowance (RDA) of iodine for people age 14 years and older is 150mcg daily.  

Other possible health effects being investigated related to a deficiency include: 
  • Breast cancer The breast strongly and actively concentrates iodine into breast-milk for the benefit of the developing infant, and may develop a goiter-like hyperplasia, sometimes manifesting as fibrocystic breast disease, when iodine levels are low.
  • Stomach cancer Some researchers have found an epidemiologic correlation between iodine deficiency, iodine-deficient goitre and gastric cancer. Iodine supplementation in the treatment of stomach cancer has been proven to increase survival rates. 

Seafood is a rich sources of iodine. Seafood obtains iodine from seawater and seaweed like kelp, arame and wakame that are rich in iodine. Seafood like haddock, cod, sea bass and perch, as well as sardines, shrimps, clams, lobsters and oysters, are rich sources of iodine. Vegetable seafood like kelp, wakame and arame as well as seaweed, nori and dulse and hijike are rich sources of iodine as well.  
Other rich sources of iodine include eggs and dairy products such as milk, yogurt and cheddar cheese, from animals fed with iodine additives in their foods. The amount of iodine that may be obtained from fruits and vegetables depends on the iodine content of the soil that they are cultivated in.


  • Selenium Deficiency
As with iodine, our soils have become deficient in the trace mineral selenium. In the last few years, researchers have found that certain selenium-containing enzymes are responsible for the conversion of thyroid hormone T4 to T3. The thyroid produces several hormones, and must produce them in a somewhat balanced ratio. Without selenium, this balancing process is hindered. In simple terms, selenium-deficient diets are also a primary cause of hypothyroidism.


  • Estrogen-like Compound Pollution
These compounds make their way into the body through respiration, ingestion of contaminated food, and skin contact. Once in the body, they block thyroid hormone production and contribute to hypothyroidism. These compounds include such environmental pollutants as PCB, dioxin and pesticides. As well as increasing the risk of estrogen-dependent cancers, these estrogen-like pollutants block the production of thyroid hormones. Unfortunately, these pollutants can now be found in both our food and drinking water supplies.




Genes

Genetics and Disease

An organism's complete set of DNA is called a genome. The human genome contains some 3 billion base pairs of DNA which is a nucleic acid containing the genetic instructions of the development and functioning of all known living organisms (with the exception of RNA viruses). The DNA segments carrying this genetic information are called genes.The human genome has approximately 30,000 genes that define a person's unique traits


The structure of DNA was discovered in 1953. The Human Genome Project began in 1990 in 250 laboratories of 18 countries. The complete human genome map was completed in June 2003.

 

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The word genome is a combination of the words gene and chromosome. If the genome was a book, it would be the equivalent of 800 dictionaries. It would take a person typing 60 words per minute, eight hours a day, around 50 years to type the human genome. You would need 3 gigabytes of storage space on a computer to hold all of this information, and yet, all of it is contained inside the microscopic nucleus of a cell so tiny that it could easily fit on the head of a pin!


Our genes represent only 2 per cent of the DNA in our chromosomes. The other 98 per cent is non-coded DNA. Scientists still don’t know the purpose of this non-coding DNA.

Both environmental and genetic factors have roles in the development of any disease. A genetic disorder is a disease caused by abnormalities in an individual’s genetic material.

The conventional belief has been that genes controlled their own expression and were therefore the direct cause of certain diseases. This laid the groundwork for the idea that your genes predetermined your health. But genes are not self-regulating. Genes are blueprints, and are activated and controlled by their environment. This environmental information—which includes the physical health of your body, toxic exposures, as well as thoughts and emotions, and more—can create more than 30,000 different variations from each blueprint, allowing for an astounding amount of leeway in modifying the expression of each gene.

Genes generally express their functional effect through the production of proteins, which are complex molecules responsible for most functions in cells. Proteins are chains of amino acids, and the DNA sequence of a gene  is used to produce a specific protein sequence. This process begins with the production of an RNA molecule with a sequence matching the gene's DNA sequence, a process called transcription.

In molecular biology and genetics, mutations are changes in a genomic sequence: the DNA sequence of a cell's genome or the DNA or RNA sequence of a virus. Mutations are caused by radiation, viruses, transposons (mutagens that can damage the genome of their host cell) and mutagenic chemicals, as well as errors that occur during meiosis or DNA replication. They can also be induced by the organism itself, by cellular processes such as hypermutation (a programmed process of mutation affecting immunoglobulin genes). Mistargeted hypermutation is a likely mechanism in the development of B-cell lymphomas (blood cancers).

Mutation results in several different types of change in DNA sequences; most mutations have no effect, some alter the product of a gene, or prevent the gene from functioning properly or completely. 

A new study suggests that gene mapping isn't effective in predicting disease for most people, even as companies invest large sums in the technology. Mapping a person's genome, or genetic blueprint, "is not a crystal ball," said Bert Vogelstein, co-author of the study and professor of oncology at Johns Hopkins Kimmel Cancer Center. "And this is a reality check." Gene mapping uses machines to analyze a blood or tissue sample and decode a person's entire DNA sequence, in hopes that the full code can guide both disease prevention and treatment throughout life, eventually launching an era of personalized medicine. The new findings, published in the journal Science Translational Medicine and based on data from thousands of twins in five countries, suggest that the technique's potential as a predictor of health conditions may be overrated. For infectious diseases to be more completely understood, the genetic material of the diseases themselves must also be studied.

HEALTH COACH: Genes are made of physical material just like the rest of your body, and they need the same things as any other flesh and blood physical material. Yes, genes are able to carry coded messages, but these codes are not fixed. They are largely affected by the properties of their physical structure and environment.

 Live Link: Gene Patents 
 

Epigenetics

In biology, and specifically genetics, epigenetics is the study of heritable (heritability is measured by estimating the relative contributions of genetic and non-genetic differences to the total phenotypic variation in a population) changes in gene expression or cellular phenotype (the composite of an organism's observable characteristics or traits: such as its morphology (form and structure), development, biochemical or physiological properties)  caused by mechanisms other than changes in the underlying DNA sequence; non-genetic factors cause the organism's genes to behave or express themselves differently. The genotype of an organism is the inherited instructions it carries within its genetic code.

Epigenetics can be used to describe anything other than DNA sequence that influences the development of an organism.


Epigenetics


The modern usage of the word in scientific discourse is more narrow, referring to heritable traits that do not involve changes to the underlying DNA sequence. The Greek prefix epi- in epigenetics implies features that are on top of or in addition to genetics; thus epigenetic traits exist on top of or in addition to the traditional molecular basis for inheritance.

 
Proteomics 

Proteomics is the study of proteins, particularly their structures and functions. Proteins are vital parts of living organisms because they are the main components of the physiological metabolic pathways of cells. The term proteomics was first coined in 1997 to make an analogy with genomics, the study of the genes. 

The word proteome is a blend of protein and genome, and was coined by Marc Wilkins in 1994 while working on the concept as a PhD student. The proteome is the entire complement of proteins, including the modifications made to a particular set of proteins, produced by an organism or system. This will vary with time and distinct requirements, or stresses, that a cell or organism undergoes.



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